How to Organize iPhone Apps on Computer with/Without iTunes

Can you well arrange iPhone apps on computer and how can you make it? In this guide, we will show you how to organize iPhone apps on computer with or without iTunes, as well as a tool to manage your iPhone app data.

Kelsey by Kelsey Updated October 17, 2025
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Can You Organize iPhone Apps on Computer?

App organization is crucial for personalizing your iPhone experience and simplifying transferring apps between iPhones. While iTunes previously offered robust app management features, recent iOS changes have limited these capabilities. This raises the important question: can you still organize iPhone apps from your computer?

Yes, you can organize iPhone apps using both iTunes (with limitations) and third-party tools. The process involves arranging app icons, creating folders, and managing home screen layouts, though available features vary by method.

How to Organize iPhone apps on computer

Part 1. How to Organize Apps on iPhone from Computer with iTunes

iTunes provides basic app organization features, though Apple removed advanced app management in iTunes 12.7 and later versions.

Note: App organization features are limited in iTunes 12.7 and newer versions due to Apple's changes.

Step 1. Connect iPhone to computer via USB > Launch iTunes > Click device icon > Select Apps in left sidebar.

iTunes Apps management interface for connected iPhone

Step 2. Use the app layout interface to organize your apps:
    • Moving apps - Drag app icons to new locations or create folders
    • Remove apps - Click Remove button next to unwanted apps​​​​​​​
    • Sync apps between iOS device - Transfer apps from iPhone to iPad
    • Downgrade apps - Revert to previous app versions

Step 3.  Click Apply to save all changes to your iPhone.

Part 2. How to Organize iPhone Apps on Computer Without iTunes

For more comprehensive app organization, Apple Configurator 2 provides advanced home screen management for Mac users.

Step 1. Download Configurator 2 from Mac App Store > Connect iPhone to Mac via USB.

Step 2. Launch Configurator 2 > Double-click your device in All Devices > Unlock iPhone and select Trust.

Step 3. Navigate to Actions menu > Select Modify > Choose Home Screen Layout...

Apple Configurator 2 Home Screen Layout modification menu

Step 4. Wait for home screen loading > Drag to arrange apps > Create folders > Modify Dock apps.

Step 5. Click Apply to transfer new layout to iPhone.

Applying home screen layout changes in Configurator 2

Bonus Tip: How to Better Organize iPhone App Data on Computer

In the realm of iPhone management and organization, FoneTool stands out as a powerful software that provides you with a comprehensive toolkit to manage, organize, and streamline various aspects of their iPhone data.

Specifically, FoneTool offers you the capability to organize iPhone app data efficiently, providing a user-friendly and versatile platform for managing applications.  

Now, you can click the icon below to get this freeware and let’s have an overview of its features.

Download FreewareWin 11/10/8.1/8/7/XP
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Selectively Backup iPhone Media Data

✅ Choose specific files (photos, contacts, messages) for backup

✅ Three-step process: Connect iPhone > Select data> Start Backup

✅ Preserve important app data separately

FoneTool selective backup screen with customizable file selection

Transfer Media Data Among iOS and Computer

✅ Transfer files between iOS devices and computers

✅ iPhone to PC and PC to iPhone functionality

✅ Selective file transfers without full sync

FoneTool transfer interface showing device-to-device options

Erase Certain App Data on iPhone

✅ Remove specific app data to free space

✅ Clear photos, messages, contacts selectively

✅ Maintain privacy by deleting sensitive information

 FoneTool erase function showing customizable data removal

Conclusion

That's all for how to organize iPhone apps on computer with or without iTunes. While the direct management of apps through iTunes is no longer available, third-party software offers a way to organize and manage app data on your iPhone via your computer.

By incorporating these methods and utilizing the benefits of third-party software, I hope you can efficiently manage and organize your iPhone app data from a computer, ensuring a personalized and well-arranged app interface on your devices.

Frequently Asked Questions

FoneTool - All-in-one iPhone Data Manager

Transfer, backup and manage data on iPhone, iPad and iPod touch in an easy way.

  • iOS 26 Compatible
  • iPhone 17 Supported

Free iPhone Manager - FoneTool

  • Full/Selective Backup iPhone
  • Transfer between iPhone and PC
  • 1-Click Transfer iPhone to iPhone
  • WhatsApp Backup & Transfer
  • Fully compatible with iOS 26
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